Enhanced Matrix Model for Finding Sequence Motif

Journal Title: International Journal on Computer Science and Engineering - Year 2011, Vol 3, Issue 1

Abstract

This paper presents a probabilistic approach to locate motifs in a given set of molecular sequences. Motif is a short sequence of DNA or RNA (or amino acids) which often consists of 5- 16 nucleotides. The methodology presented here is based on probabilistic approach (Likely Hood Ratio) with three wild card ocations to express motif locations and their poor, moderate nd good results on the basis of matches found is observed. The proposed method allows three displacement locations (i.e. 1, , & 11) unlike other motif finding techniques that allow only two displacement locations.

Authors and Affiliations

Pankaj Agarwal , Laxmikant Vishwamitra

Keywords

Related Articles

A Bee-Hive Optimization Approach to Improve the Network Lifetime in Wireless Sensor Networks

In Wireless Sensor Networks (WSN), maximizing the lifetime is a challenging problem. The main task of a network is to receive information from node and transmit to base station for processing. If all nodes forward data p...

Survey on FPGA Routing Techniques

Field Programmable Gate Array (FPGA), a programmable integrated circuit, has gained great popularity in the circuit design. Routing is an important part of FPGA design step which determines the routing in horizontal and...

Case Study of Survival Function under Strength Attenuation of System for Exponential Distribution

In this paper an expression for the reliability of a single component system is derived when the strength of the component and the imminent stresses on the system are random and follow non-identical Probability distribut...

Building an OSS Quality Estimation Model with CATREG

Open Source Software (OSS) has been a popular form in software development. In this paper, we use statistical approaches to derive OSS quality estimation models. Our objective is to build estimation models for the numbe...

SIMULATION BASED PLANNING FOR DESIGN OF WASHING MACHINE USING H/W & S/W CO DESIGN

A simulator is designed and developed for helping embedded system development team to plan their time schedule, work flow etc. and distribute human resources and their efforts over various phases of washing machine devel...

Download PDF file
  • EP ID EP160502
  • DOI -
  • Views 124
  • Downloads 0

How To Cite

Pankaj Agarwal, Laxmikant Vishwamitra (2011). Enhanced Matrix Model for Finding Sequence Motif. International Journal on Computer Science and Engineering, 3(1), 76-82. https://www.europub.co.uk/articles/-A-160502