In-silico identification of cis- acting regulatory elements in 5’ regulatory region of Betaine aldehyde dehydrogenase isoenzymes of selected monocot and dicot
Journal Title: Annals of Plant Sciences - Year 2018, Vol 7, Issue 1
Abstract
It’s challenging to understand the multifarious gene regulatory networks. Diverse biological processes, are mostly conferred by nature of cis-acting regulatory elements (CARE) located within the regulatory region which include abiotic stress responses, hormone responses and developmental processes. Thus, the identification of CARE and their organization is a crucial step for better understanding of spatiotemporal expression of the gene. The putative cis-acting element that are located within the 5' regulatory region of BADH isozymes of Hordeum vulgare , Oryza sativa, Sorghum bicolor, Leymus chinensis, Zoysia tenuifolia, Arabidopsis thaliana, Amaranthus hypochondriacus, Chrysanthemum lavandulifolium, Populus euphratica and Atriplex prostrate were identified using bioinformatics tools. Several probable cis-acting regulatory elements that are coupled with cellular development, hormonal and stress response were identified as: Me-JA, GARE, GT-1, MYB, W-box, I-box, Pyrimidine-box, ANAERO, ARF, CARE, ASF1, SORLIP, SURE, TAAAGSTKST1, GCC Box, CICADIAN, Sp1 and CGCG Box. These results shed light on probable cis-acting regulatory elements these BADH isoenzyme that confer their expression and regulation during cellular, hormonal and stress response.
Authors and Affiliations
Hemani Sharma, Sumit Govil, Divya Shrivastava
Keywords
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- EP ID EP280459
- DOI 10.21746/aps.2018.7.2.8
- Views 115
- Downloads 0
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