MULTIHEURISTIC APPROACH TO COMPARE THE QUALITY OF DEFINED METRICS ON THE SET OF DNA SEQUENCES
Journal Title: Современные информационные технологии и ИТ-образование - Year 2017, Vol 13, Issue 2
Abstract
In this article, we analyzed some several metrics that determine the differences in DNA sequences of different species. Several standard metrics are considered, as well as a modification of the original author's metric, the previous versions of which were considered in our previous publications. Determining the quality of some several metrics, we proceed from the assumption that for any three distant species, the distances between them computed from this metric should form a triangle close to an isosceles acute-angled triangle. We consider several variants of the deviation of a triangle from an isosceles acute-angled triangle, and then we consider the sum of such deviations for all the resulting triangles. Based on these calculations, we make a conclusion about the quality of the original metrics. After these calculations, we apply the obtained technique to the consideration of the same metrics for close species (anthropoid and human), and on these closely related species, we obtain slightly different results of a comparative analysis of the metrics under consideration.
Authors and Affiliations
Boris Melnikov, Svetlana Pivneva, Maksim Trifonov
Keywords
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- EP ID EP320415
- DOI 10.25559/SITITO.2017.2.235
- Views 114
- Downloads 0
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